cblaster
d3plot
Contents:
Usage
Classes
Context
Database
Helpers
Local
Main
Remote
Formatters
Parsers
Plot
cblaster
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Index
A
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B
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C
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D
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E
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F
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G
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H
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I
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N
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O
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P
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Q
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R
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S
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T
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V
A
accession (cblaster.classes.Scaffold attribute)
add_field_whitespace() (in module cblaster.formatters)
B
binary() (in module cblaster.formatters)
bitscore (cblaster.classes.Hit attribute)
C
cblaster.classes (module)
cblaster.formatters (module)
cblaster.helpers (module)
cblaster.local (module)
cblaster.parsers (module)
cblaster.remote (module)
check() (in module cblaster.remote)
clusters (cblaster.classes.Scaffold attribute)
copy() (cblaster.classes.Hit method)
coverage (cblaster.classes.Hit attribute)
D
diamond() (in module cblaster.local)
E
efetch_sequences() (in module cblaster.helpers)
efetch_sequences_request() (in module cblaster.helpers)
end (cblaster.classes.Hit attribute)
(cblaster.classes.Subject attribute)
evalue (cblaster.classes.Hit attribute)
F
form_command() (in module cblaster.helpers)
format() (cblaster.classes.Session method)
from_dict() (cblaster.classes.Hit class method)
(cblaster.classes.Organism class method)
(cblaster.classes.Scaffold class method)
(cblaster.classes.Serializer class method)
(cblaster.classes.Session class method)
(cblaster.classes.Subject class method)
from_json() (cblaster.classes.Serializer class method)
full_name (cblaster.classes.Organism attribute)
G
generate_header_string() (in module cblaster.formatters)
get_cell_values() (in module cblaster.formatters)
get_maximum_row_lengths() (in module cblaster.formatters)
get_program_path() (in module cblaster.helpers)
get_sequences() (in module cblaster.helpers)
H
Hit (class in cblaster.classes)
hits (cblaster.classes.Scaffold attribute)
(cblaster.classes.Subject attribute)
humanise() (in module cblaster.formatters)
I
identity (cblaster.classes.Hit attribute)
ipg (cblaster.classes.Subject attribute)
N
name (cblaster.classes.Organism attribute)
O
Organism (class in cblaster.classes)
organisms (cblaster.classes.Session attribute)
P
params (cblaster.classes.Session attribute)
parse() (in module cblaster.local)
(in module cblaster.remote)
parse_fasta() (in module cblaster.helpers)
poll() (in module cblaster.remote)
Q
queries (cblaster.classes.Session attribute)
query (cblaster.classes.Hit attribute)
R
retrieve() (in module cblaster.remote)
S
Scaffold (class in cblaster.classes)
scaffolds (cblaster.classes.Organism attribute)
search() (in module cblaster.local)
(in module cblaster.remote)
Serializer (class in cblaster.classes)
Session (class in cblaster.classes)
start (cblaster.classes.Hit attribute)
(cblaster.classes.Subject attribute)
start() (in module cblaster.remote)
strain (cblaster.classes.Organism attribute)
strand (cblaster.classes.Hit attribute)
(cblaster.classes.Subject attribute)
subject (cblaster.classes.Hit attribute)
Subject (class in cblaster.classes)
summarise_subjects() (in module cblaster.formatters)
T
to_dict() (cblaster.classes.Hit method)
(cblaster.classes.Organism method)
(cblaster.classes.Scaffold method)
(cblaster.classes.Serializer method)
(cblaster.classes.Session method)
(cblaster.classes.Subject method)
to_json() (cblaster.classes.Serializer method)
total_hit_clusters (cblaster.classes.Organism attribute)
V
values() (cblaster.classes.Hit method)
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